Scaffold Ga0335025_0033247

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0033247
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3486
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → Chitinophaga eiseniae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0033247_1853_2284	F011844	N/A	MGQILGSLQDVEIDVAGGTSYKSLVCLRTSSVNTTMDATTEQTNCGAFTSPSAPQMSVDFDAICETAPSISQVSYEDLLTAMVNKTQISVRVQNPTVSGSSVGTVYYHQFMGYITDLTMNQSTTEFINFSGTIQSNGALDITA
Ga0335025_0033247_2292_2687	F010155	N/A	VNALNGNLSYNGKDVPVYGQNPFRTMPQNYVIISSITEVASNTNNSFGNIVDVVIDISSEQYRVYDNSIVDNIASQILNILIPDTQVDGFDDANFEVFPTARTLSTYLPVVNGDNFIARKIITISNLVNQK