Scaffold Ga0335025_0015879

Overview

Basic Information

• Taxon OID: 3300034096
• Scaffold ID: Ga0335025_0015879
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5322
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F002421	Metagenome / Metatranscriptome	560	N
F006139	Metagenome / Metatranscriptome	380	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335025_0015879_1468_1866	F002421	AGGA	MANCTICKETIAYPDIQGKTHFVCDGRVPARKQTPFVQGMLASQSSADARWTRPQQNEVDAAIVHVARTKGFFTSDDIWKHLGDDFPVTKGIAGRLNAAARRGIIRNTGELAYANRGGAHDHAQRLSVWAGI
Ga0335025_0015879_2856_3296	F001872	AGCAGG	MNEWIRQAIAASNNAVWNNGSWGIRDMRGSVGSLSVHATGRAVDLSYRKTEKHAQANRKGAVSFIDVVVANANTLGVECILDYFPSPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKP
Ga0335025_0015879_3542_3706	F006139	N/A	MDTQVVVALVGGGFAVVVALISKIGSDNKKDHGKVHQVLGRIEEKIDNHVENHR