NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0004107

Scaffold Ga0335025_0004107


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0004107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11012
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018500Metagenome / Metatranscriptome234Y
F024037Metagenome / Metatranscriptome207Y
F028727Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0004107_7157_7357F018500N/AMNLTFNITKYAGVMAFYAVLTYIIFPAIAYFLFGKTLDAAGNGFIVGSVVSVVLWKVYGFGLVKGA
Ga0335025_0004107_7375_7566F028727N/AMEALIHFNIGKNGEHKEHTYVRISDQIKIHIPDKDEFFKIFKTVLFFSTVSGLLSAYIIKRHL
Ga0335025_0004107_7681_7950F024037N/AMYLIREKRPEYAHLNSKGVFVKNDLPPSPHHCTISHFTNVHVIHNTRYYDLSIQDTYWNYYDADAVERAYITQALRVITGDPDFIFDNY
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