NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0043712

Scaffold Ga0335022_0043712


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0043712 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2954
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060658Metagenome / Metatranscriptome132Y
F078232Metagenome / Metatranscriptome116N
F082227Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0043712_1608_2012F078232AGGAGGMPVLTPQELADTGGCFDCLEPGLQQTMLLSLLQQIQVASFDAARTTASPGGLLTATATAAANPGRRRFVIQNQKNEELFVKFGTGATLSSFHIALPAHNAGSKHSDPFVFEGYTGAISVIPASGSPSYTFAEFV
Ga0335022_0043712_2415_2945F060658N/AMPFLVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDLAQNYNSADPVCPRVIQFTAVADDATNYVIGTTGIMCDDNIVTNAGISVATVALLVAALQARWDTEFGAGAATWSVVSGNLIQVSGTICNSVTLEFSI
Ga0335022_0043712_3_203F082227N/AMIVPVNIVAVQVNQNNSLFVTTGVDYDSDGAVVGSEITSQYTLVPGDSLEGQPTEVVNIANALWTPA

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