Scaffold Ga0335022

Basic Information
Taxon OID	3300034095 Open in IMG/M
Scaffold ID	Ga0335022_0020260 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034095 Open in IMG/M

Scaffold ID

Ga0335022_0020260 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4359
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4359

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021773	Metagenome / Metatranscriptome	217	Y
F044501	Metagenome / Metatranscriptome	154	Y
F085716	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0020260_1106_1738	F044501	N/A	MKWLKTYKQHNESIVINLQYQSIDLMESLNIWHDVLLNSISAEELDIFDKFSLPKDMYSSKLDIDYLVDNIEFINSLSSIGLKKSTIQNTEDSQTFLNKPCKFMFVYNAESNELENPIYIIFQVWNDTLNKWEDVKLYKVNDDIKKFYDKLSSKTIEITDGDENYIYQTSNGSDWELQNLKKENDIYQRYFRKEQLQQLLSDRNVKLTII
Ga0335022_0020260_1791_3245	F021773	N/A	MKWIRNYKLFKEAFEVQTEKPVKPLYTNKNIIHEICVSMVLLNNNFLDNILDRGLKARYSENSEIFLTDLKNLVLAKNRLNLGRFEGDTCVDDGDLGKINGLFEESDFNIEKDWDKLVNARVTARNIIDKLIPDEKLNSEDIKSIYWLGPNKDKEHNEDVVIETKDGKQYSLFLNKSLTAQKTASFNSFADDLIGADIERLYGEEYMPRWSKLTQEWVRLIYENANKNIQQYIEKFIDPKRIETMGYFEYFDVRHQDPKFKHLGEFIEEFDKNILKFSDLLNEIWKHRENCFMDVERVEKEWYETKIVILNSKILENLLTTSLKTNFPEDIQKIEGGNYKLSGGTVKMKLFKTLVEKLGCLERPTYFLGNSGNQFNLVPSRDFFRKYYDEINLKFDYHVNFEVSEEEENNDFKVKISLELDEEKLIDMTIFIKFSGSELSGKLSAKYKYELADNFNYLIANKENSQSENIKDDFEDEDIKDNNE
Ga0335022_0020260_3284_3544	F085716	N/A	MNKIVNIVYWVVTTFFFLVYWTQVGSWYNDGVEWYGLIGAGVAANGAFFGNIAWTIITKNDVYKLEHKGEDMPLVKSLKSLLFWRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335022_0020260

Overview

Ecosystem & Geography

Associated Families

Sequences