Scaffold Ga0335022_0007052

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0007052
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7006
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013412	Metagenome / Metatranscriptome	271	N
F013755	Metagenome / Metatranscriptome	268	Y
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0007052_1280_1459	F013755	AGGAGG	VSDTPISDSTPHNVAELGILCRRLERLAAVRLAYITQLETENDAMRADLLLWNEKEVKL
Ga0335022_0007052_3585_3914	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKPYAQRVQFRSFDPDDMDAVLLLTEGTHVMFDGDCDAVADKSSTGWWYANPRITGRIHEILPSGHES
Ga0335022_0007052_420_692	F059002	N/A	MNILNEIKNGISRLLGVHKTVEAKETPKTLKPKRSPKRGRGRPKGLKIPQQIVDAVRQADKSITNKQLAAKYRVSYFWVWSVRSNKLRLN
Ga0335022_0007052_859_1101	F058715	AGGAGG	VSLLEKLGLTKQSMEKMLGAVAPLKKTKIKRYRRYETVPADIRKAILGEHSSYTCRELAKKYGISSSTIWDIRDSKPKIE