NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0002537

Scaffold Ga0335022_0002537


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0002537 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10899
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038150Metagenome166Y
F042221Metagenome158Y
F049495Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0002537_1895_2149F038150GGAMTDDDFRRLESKVDKLTDAVGKLILFEERQATQGTRIGNVETKIEVHDVHLQRIDKKVDQWVNRGVGVWAAAAIVYSAIQFLKK
Ga0335022_0002537_553_795F042221GAGGVVNEDDEFERIAREIKYRLDSTLSTVVADDYYWIPIDHTTPTGVKVLLLGRSGVATMGHYEALPGTQFWTHWAALPRKRP
Ga0335022_0002537_907_1065F049495AGGALNDLPNFPAWERQTLDKFAADSYIRMQQQAEAIEQLRQDLRDAMKLLRSTAL
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