Scaffold Ga0335022_0000523

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0000523
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22039
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N
F026825	Metagenome / Metatranscriptome	196	N
F094883	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0000523_12459_14306	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGFSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATTDEIKCGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIAENDQTSLLWSGSAVVFDNRLLMTAQPRYNAQGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGAKFDNNIADGKKEIQWLVHTRAYNFEIPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSTISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0335022_0000523_15066_16040	F005740	N/A	MKLIVQDIRSTIARVIGVCVDDARVYEYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGESNGACVGKQLVDRGTVVSYRDMSGETNSFIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTVSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0335022_0000523_16058_16936	F094883	N/A	MAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLESATDLATKTTAAEQSQLEAQLRRAIPGYDQLIQQAGKTIGSRLRGEVDQDVQSQLQRAVAGRAVGGGFKDASGIRTNLLARDFGLTAMQIQNQGLAQAQSFIQQQRTMGMAQPFSISSMFITPAQRIGAIQQQQSAMYGRDLTAAQVAAAPSPMAQAAQTAFTNFGGIAGGALSQYGMYQGLMQQQPGAYRPQSYNPQNDSEIYPNLYAPTPTRSDITPLSTSLFPEYGSSNYRP
Ga0335022_0000523_207_491	F002843	N/A	MIVPVDIISVQVNANNSLFVTTGIDYDSDGAIVGSEITSQYTLVPGDDLTGQPTEVVNIANALWTPAVVEAYKAANPVPVVATADSLAEAPAAN
Ga0335022_0000523_500_694	F026825	N/A	MTDHHAFLRDISIGVGGPIIGILGNAVFSDPHLKTASLALGAFAALLTCVVKALELYRKLKTEK