Basic Information | |
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Taxon OID | 3300034095 Open in IMG/M |
Scaffold ID | Ga0335022_0000158 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38415 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (39.58%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F016250 | Metagenome / Metatranscriptome | 248 | Y |
F102616 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335022_0000158_10595_11068 | F102616 | N/A | MSLEYKVPRILWENLESVLYAQSKRYVMELAKRLGVPEKELLKRVLPTSDSLHVMIQDSQVESNQCKAYVQHDNMTVFCKKATAYHSEFCVYHRNTRMTVIDGTEPIVIQKVKDRNDMEPMWVKDNVLLNSNGNIVGKINRDQSIMKRFVVEVPKSE |
Ga0335022_0000158_22183_23160 | F016250 | AGGA | MSPIHILLSTLVVLFIVAAFYAFYYSEHMINQNPFLDKHLLKRGLDKPVIWLYYDNSDVNAREWGDFGARSSRALNIPFLNLCYESIVKQNKNEYRVEVIGGLSGAAELLGGWDQLPPGLRNPLSPVNEAEMNYLRAAILAKYGGLWLSPYCVCLKGFGVLPKDKAIFFGTDLDETYAGSSGTNMPGFRALWSPYPEHPMFKEWTAVTYSRVAQKRGGDQIRGDVKWDFVRFSKEYVHTGLLVDPAVEGMRKKNGKRIQLEDLLAAGTDGNLPFDLSAYTVYVPFPWTELRDREMFGWFLRMSEQQIMESDLAVKYLLEKSLKSR |
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