Scaffold Ga0335014_0000305

Overview

Basic Information

• Taxon OID: 3300034094
• Scaffold ID: Ga0335014_0000305
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33624
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (29.27%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F021128	Metagenome	220	N
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F056542	Metagenome / Metatranscriptome	137	Y
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335014_0000305_15946_17790	F097170	N/A	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGVNRTRPSIRNIQIVAGAEQSATIVNDIQNGNFQGAYPYRSLKYNSADGLLISVSGVIYFLKITNNLATAYKIIEGNDPGMMHTWFVQAEDRVYIQNGYQNAIVWDGDLNVSAYRLNPYNQKMPIGTVMEYAFGRVFVSDRFNQIYASDIIYGNGFTDTTNTENFTEITYWAEGGAFATPAMMGNITAMKVMPQIGTNLRGQGELVILTGNGAFSMDVSIPRDQWNTSNIQRISLLGRGCTSPYVGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVSNDTPWLKQFASTMFFDNYLISTVAPQTFRSEGVEGLNRYHRGMVVLDLDQSSSPSPDAQLSFRWNGIWTGFRPTQLLTALIDGQKRGFGFSFDKDNKNRLYEFTTSQGDDYGPNGTRNIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSSVEFRADSNPCWSELKVPTTFGCNPCSPQVTECIPQKGGNRYKRYKFNTPDPNECNDLAGIPAVEGSEFQIKVNLTGAATVDRLRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWEYSIIN
Ga0335014_0000305_18298_18465	F056542	N/A	MTPLKGTDPKLVSGGAPTRGMIREGMGNMNPPNTGKNPYSSAPMPKSGKPVGAMK
Ga0335014_0000305_18487_19449	F014513	GGA	MADTLEEMVEVVKGFVGDSGVCSYDRAVKAVNQARRLLWNKRAWTSQEEYVQICCVNDCFTLPSRYEQIKLAWIGNESTSLADEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEVQDQYDTYQKVKVTTDNPPTLAKSDLLVKGIRAVSKPITKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPRTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMEGLEIPTAAPIRFANYSRADNLIGADILSPTPNDYFLYR
Ga0335014_0000305_28817_29029	F075040	N/A	MKDTPTVKKEVAEKPAVNSELQREIYLRLVSAAASDGKFELGKLPNAQAVVKQGDHLKGVAELLANCFEK
Ga0335014_0000305_30371_31180	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFNGHKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKVEFDRPSEEPARVTSAPKVIVTDNPEKALDEIVELHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSSKVEAPKKEEPKVEELDPADWASVIVPSGSHKGKKLAEIGKPALTKLYQYYLEKGFNTPFAKCVEQAAIDLNLDSPEETDDIPW
Ga0335014_0000305_32699_32980	F015061	N/A	MSEQTPQNETSKSILEAFSFIKCEDEKLNERVHAMASLLHTASMMVVRSESRKGEGFEAIRYLETAFLYYKESQFRKRFDKEEEKEEAPRIIS
Ga0335014_0000305_4806_6215	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRTITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDAAWFVPEHTLNNEAGYDLCALRVKMAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNAGLAPFNEADPATWARLVRVPRYIKTVLENGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0335014_0000305_6947_7213	F027487	N/A	MACFTDLDYRNKSYPFVQTIAAAAGIDPISYGCYDSATDAAKLYQFYVGLATIGGLTPVTQNCFVQKTEDQQYYLTNEALAAALNPVT
Ga0335014_0000305_89_466	F021128	AGG	MKLKNKNLAPVGGFYWRYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYRSNGVELPSNIEQLVEDQICQRQPSDRCWYSDGLGDRIAQVIHTVAKTTDKVLGTKLEHKARGCSSCNKRRNALNSLS