NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0116742

Scaffold Ga0335012_0116742


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0116742 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1479
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002909Metagenome521Y
F068841Metagenome / Metatranscriptome124N
F080819Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0116742_1074_1391F080819N/AMLHLTGLKGQSISIDSATLRSANSYLVKGAIARHKVSQLIKIVQADSIIIDQQDSIIIKQKLNIGYLKDENKVLVKQNKAISRTLMSYKMLSVVLTILSVAIWLK
Ga0335012_0116742_46_315F068841GGAGGMIELAINGWILSVPGIVQVEKYIYTIEAVDNYLINNHFDELRNYVNSRQVGFGDCVATEFDGINSEAFFNNEVDKFTVLFMLGQQTNFL
Ga0335012_0116742_550_1086F002909N/AMAEIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFAPGNITKSPTSINTILVAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLVKWLEQKGLKPYEGQSYDTYAKAIARNIHRSGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
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