NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0109213

Scaffold Ga0335012_0109213


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0109213 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1539
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F018001Metagenome237Y
F038234Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0109213_1157_1507F007690N/AVDDIDKLNNMLTIKNILKLQGQPLVDGWETNNIYEGNHNDTYIFELVKRKPYPIHNELCTIMLERTGHKIFGQPGLSYFFIFDSQRTNVCATADWLADKDNMIERLEYMIMNKENL
Ga0335012_0109213_134_409F038234N/AMLTIQNIDSLKGTYVGHWKIHYVTKSKDNYLIKVVHNGSPFDMFNFSIGRVKTSNGDYLMYCQETGNRHYLPIESIGDRDVFIRFLIDELI
Ga0335012_0109213_751_1095F018001N/AMLTIKNIEYLKGKELNDWKVLDAGQDLRAELGKNIYLLTFARLDKGVMQDDRAGVIIDRNINPLLKGYHIKIVYEDWSYEIDTIVWPAVNIRNKDAFFGRILYKINEEYYKRSR

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