NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0015314

Scaffold Ga0335012_0015314


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0015314 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4577
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022649Metagenome213Y
F031866Metagenome181Y
F048996Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0015314_3061_3390F048996N/AMLVINNIEKLNNKTIGAWRVAGVEIDYQRTNLSPDHSYTIRLSRSGAGIGAAIIIERKSGQFGYNVSVCYEDYDNVISIMPFGETELKNKDVFLSLMRGILDSEYDKKN
Ga0335012_0015314_3750_4040F022649N/AMLHIKNPDDIKGMNFVDGRFTLRGVEIFYEKYRFAFKETSRWVYVDVYRYPKWDSEQNVNMYRVDNGKFDNHWISAKWFGIIKNAKLTFNSALKDL
Ga0335012_0015314_4042_4407F031866N/AMRKMTKKAPQFLKGIEFNIPVFNAEKQMYLCTDVEWIKTSEGKDYNISLSEVKQNYSVPEKIIVSLFIPDTDANGEPANVNMFEVRPNNRNLPLTKVMVTKSKLSSLGGLKKVFYNMAKS

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