Scaffold Ga0335012_0015314

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0015314
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4577
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022649	Metagenome	213	Y
F031866	Metagenome	181	Y
F048996	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0015314_3061_3390	F048996	N/A	MLVINNIEKLNNKTIGAWRVAGVEIDYQRTNLSPDHSYTIRLSRSGAGIGAAIIIERKSGQFGYNVSVCYEDYDNVISIMPFGETELKNKDVFLSLMRGILDSEYDKKN
Ga0335012_0015314_3750_4040	F022649	N/A	MLHIKNPDDIKGMNFVDGRFTLRGVEIFYEKYRFAFKETSRWVYVDVYRYPKWDSEQNVNMYRVDNGKFDNHWISAKWFGIIKNAKLTFNSALKDL
Ga0335012_0015314_4042_4407	F031866	N/A	MRKMTKKAPQFLKGIEFNIPVFNAEKQMYLCTDVEWIKTSEGKDYNISLSEVKQNYSVPEKIIVSLFIPDTDANGEPANVNMFEVRPNNRNLPLTKVMVTKSKLSSLGGLKKVFYNMAKS