Scaffold Ga0335012_0011639

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0011639
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5269
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pseudanabaena phage PA-SR01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083618	Metagenome	112	N
F100650	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0011639_3567_3869	F083618	GGAG	MALQQIIQHPTGTYSQYWKIRTLSLNHTAKTGTVILDGYVSEQARIDNKIPLDERTIPVVDFDTWFAPAVIDAAGMNEVKSAYDFTKSIPNGEFVGSTDV
Ga0335012_0011639_3869_4189	F100650	AGGA	MPDIYTNYATSVGVTAATVIYAGITGTAIVNAIHIANSNTTLANSVSVQLFKGATGYYIVRAAAVPIQATYQALDAPIPLVTGDTLKVTAGLTAGLDIIVSVLEST