NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335012_0004580

Scaffold Ga0335012_0004580


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0004580 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8434
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012978Metagenome / Metatranscriptome275Y
F013085Metagenome274Y
F016809Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0004580_1735_1992F016809N/AMSKIKDEFMKQQLTGSIGGDEDYLYEQYIAQEQMNEQYWQWKNVQSHSIFPDEVQYEDEYYKSSYLPTPDEEAENYKQTKQNGNT
Ga0335012_0004580_1979_2329F013085N/AMEILSEIIEASNHMIDSLEETDFFVETPFIDRIPLKRALQIAMQRKWEQEDDMFLNDAEFLEVCQSVSAKGIGKTIGDLVDKGALNMSVNKDGDILYSANKDFQFDKDDDDEFQQD
Ga0335012_0004580_2310_2567F012978N/AMNFNKTDDELKGMSDDELFEYLDAKTLHLKQHTSPLSSYKTKKFASIGAAISNTKFDYDSVKQIAKENEQKGYEKFIKDKNKNNE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.