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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034093 Open in IMG/M |
| Scaffold ID | Ga0335012_0000417 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29536 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (79.25%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000220 | Metagenome / Metatranscriptome | 1544 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F004695 | Metagenome | 427 | Y |
| F098944 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335012_0000417_16985_17488 | F001915 | AGGA | MEWTLAHPLHDVDDIVDMADSVFGTEVDGILTRDRGVFRKHLTVATTVQLFDRSKEFIAVCNDELNIYGYCWFDRGGYTTYSNEEISNAKFHHVDLQLPARLRVRLINEMIDQHILWAYTWGIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGIECLKK |
| Ga0335012_0000417_17473_17988 | F098944 | AGG | MFEEIRPEGSTVTSEEIKQRARDYAKTKRAQKKAMKLATGQIEPKEAIETVAVVDEFDMSTFTPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNDFMESLRKV |
| Ga0335012_0000417_20975_23140 | F004695 | AGGA | MLDKQNVIVENLASSSGNRGITEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPVTQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESMQEPMGNELEEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAGTCLKGAPFMDAISIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKVEESGSVTALNIRKAQDIDTDDMFEALAAKRGKLSSVQV |
| Ga0335012_0000417_4131_4742 | F000220 | AGGA | VSEEKPADVLSKVLSYVDSPFKLFALVLMAVFAFSGYFIWQNQAFLFEAYKENRKLPTIAEDRAEDVAAHLFKNTNATVVAIFKVNPLFGTRILHRAYTREGRERTHEGLDVGLFTQSSANNRDVVALMANETPCSEYAVPQSEIGLWYIDKGVTFGCRISVPPEQGRFVGQITVGWAKEPKDLTKAIGMLQIASSMLSKSKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |