Scaffold Ga0335010_0197006

Overview

Basic Information

• Taxon OID: 3300034092
• Scaffold ID: Ga0335010_0197006
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cholerae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028786	Metagenome / Metatranscriptome	190	N
F099187	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335010_0197006_1003_1215	F099187	N/A	LDNIPVGLIPEGYFEGFCEGWTWTLGRNNLELTMSVSNSIYSTLSIQWEDYNAVIQWQNLANDYRWLDVI
Ga0335010_0197006_3_161	F028786	AGCAGG	MNLMQSFNYKQVSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKT