Scaffold Ga0335010_0041620

Overview

Basic Information

• Taxon OID: 3300034092
• Scaffold ID: Ga0335010_0041620
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3381
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F007570	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335010_0041620_2639_2920	F003803	GGAGG	MTKDKTLLRFRIYDGDREYTDYAIIDSKQLLTLNYKEIISKFFYDNKVDDEQFLSDGRAIRIESEIPITDADARKLESLSMAYLHDFKLEEVA
Ga0335010_0041620_3063_3230	F007570	AGG	MNEDITYIKKYIKTFNDRRLREEYNLYTSLEKPTILENYFKDFIKQEIGTRGIGV