Scaffold Ga0335010_0025886

Overview

Basic Information

• Taxon OID: 3300034092
• Scaffold ID: Ga0335010_0025886
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4518
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F027126	Metagenome / Metatranscriptome	195	N
F076011	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335010_0025886_1846_2349	F000847	N/A	MSWIKIKQALLDLANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLSSTVNLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPV
Ga0335010_0025886_4096_4362	F027126	N/A	MATFRKYEFAVYADFRTINDSEVEPRTVVELGHINPANPKAWCVDILWEGDEPKNWTKDQTWPKPVGIHTFAGWDEQYAADYEQHKSL
Ga0335010_0025886_4359_4517	F076011	N/A	MKLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGA