Scaffold Ga0326724_0000773

Overview

Basic Information

• Taxon OID: 3300034091
• Scaffold ID: Ga0326724_0000773
• Source Dataset Name: Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63102
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (47.83%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007065	Metagenome / Metatranscriptome	358	Y
F080778	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0000773_52062_52385	F080778	N/A	MDLASRIATLSPDIYVSLRGAKDLIDLCKSHPKLADLTPSTIDSHEGYCVACCGSDIVGRIKCELRSVEDLIILKAVNELGSKDALKLQEKTMKAWQWTKPLTVTTR
Ga0326724_0000773_60184_60621	F007065	AGG	MAGPAASLLNQRLVAMLREQLNHEEHETEVYAKKVSETKHSIAKVLYAKLMRDSMQHCDVLNCAMNYLVTSQWETLAPIHESRDELLRLMDMEEKALRLFTSASAQVTDPHLKTLLMMLALDEEQHYETLRYVLENFVDKKVITV