Scaffold Ga0373901_003118

Overview

Basic Information

• Taxon OID: 3300034083
• Scaffold ID: Ga0373901_003118
• Source Dataset Name: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2578
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location

• Location Name: USA: Oak Ridge, Tennessee
• Coordinates
  • Lat. (^o): 36.0103
  • Long. (^o): -84.2696
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006410	Metagenome	374	Y
F106037	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373901_003118_1115_1363	F006410	AGGGGG	MAEKPKIAPEKAKEMQERTRERSLIVKGIKDQGPQTLDELSKITGIEKEKLFRHVIAMRQFGKIAIAGERDNQLVYGLPEGQ
Ga0373901_003118_1756_2061	F106037	AGG	MSKVSCREVYFIKASGPNVDYLINKVKAAVEEVGLPPKYDINVYKNVYACCGLSGTGLILEVTGPSEKKIKSIDLKAVAKILELCEKEGIESHHFEPLEIG