NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0131037

Scaffold Ga0335020_0131037


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0131037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1268
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F009599Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0131037_239_463F009599AGGAMIKLQGLSKQDVQICKLLWNCDTVEAVDAMVRAMPPAYKSRAVVMRELMTAAQLDQVEDIDENVTAYLQHIASR
Ga0335020_0131037_790_1173F000354AGGAGMAKVNYDNFASFDINECCDHFDSDKQSNWKKINKFIVADGQEFAHIMESEFDFEDTGSGEYEAFQAGVKYALTKMNIAFEAAGLDLQVCEVDLVESMGYVLVRTDDEPEDFVKRVLKKPVMMVDSWI
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