NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0046517

Scaffold Ga0335020_0046517


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0046517 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2303
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004978Metagenome / Metatranscriptome416Y
F006112Metagenome / Metatranscriptome381Y
F006698Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0046517_1258_1512F004978AGGAGMITADTIKVLASYSPQYLTKAAQLAGYKGANFTACKFLGITNGGQFCYQAVFPVKGGTDSTKVFLSYDHDEDRVIADYQLTELA
Ga0335020_0046517_375_638F006112N/AMYIYKADKRTKTGERLFSTTVWQDRTAEGMRNECNGLYWLYPATQGWRFEYFPTMKTVTNLMSGAEIQIAHDTPRSCDPSSELYWSM
Ga0335020_0046517_835_1221F006698AGGAMRHYEELAVYEREGYEIIVDKTWEDISVADCFDDTQFDIAEINHNIEHGHLDWFMLRVRVLVEGLELDSEYLGGLLYEDARECLTDGSAEDLITQSLANAKQQVYRLYRKFQDLSWELDAAGVDRTTV

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