Scaffold Ga0335020_0046517

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0046517
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2303
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004978	Metagenome / Metatranscriptome	416	Y
F006112	Metagenome / Metatranscriptome	381	Y
F006698	Metagenome / Metatranscriptome	366	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0046517_1258_1512	F004978	AGGAG	MITADTIKVLASYSPQYLTKAAQLAGYKGANFTACKFLGITNGGQFCYQAVFPVKGGTDSTKVFLSYDHDEDRVIADYQLTELA
Ga0335020_0046517_375_638	F006112	N/A	MYIYKADKRTKTGERLFSTTVWQDRTAEGMRNECNGLYWLYPATQGWRFEYFPTMKTVTNLMSGAEIQIAHDTPRSCDPSSELYWSM
Ga0335020_0046517_835_1221	F006698	AGGA	MRHYEELAVYEREGYEIIVDKTWEDISVADCFDDTQFDIAEINHNIEHGHLDWFMLRVRVLVEGLELDSEYLGGLLYEDARECLTDGSAEDLITQSLANAKQQVYRLYRKFQDLSWELDAAGVDRTTV