NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0013416

Scaffold Ga0335020_0013416


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0013416 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4846
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032276Metagenome / Metatranscriptome180N
F096881Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0013416_1586_2197F032276N/AMIPTNVNNLTIKEFIEYENIRTSSLENIDKIIQIASSFTDISVSEYENMSFNELEKVKSKVLLLINSKPNTRLKNTFWHDGTRYKACKDEKDFKTNQYTALKQYETDVINNLHKILALIYVKCPVFTKYKFNSDNVEEISDVIYNYGKVGDVYGTLFFYSNRSEKLKADLLNSLEEVQKEIAIHMEEVNRELKASGENMVGTL
Ga0335020_0013416_2945_4156F096881N/AMAITILSKPTDALYYGYVPCYNNQWFVASSDQTLAANFKYYIVVTDILSGYSVTEKFLPNPSGKLQFDASKFSELLMTNYIPVNVYGFQQNTSIRKIRVNIGEIYGSPLPGTITSGTDIEYNVWNGSLEMLTFSQYNSKNYTWDLSTTPNLNYPVLLSDLADDYTFNNRSNFLYWMMLEGQTDLPKIYLRTYNAAGSVLNTYTITNSVSTGTYRTNMVCIDVGKKGIDGINAAYLTGVEYYDIMAEINSETAPFKIKRYTIKCSPRFDVFTLHYLSTTGAYETLHCSKVSELNSTKTSTTFKRSPWTNVSNVMTLDYSVAVEQPTIVNVQNGLKLNSDWVTKAELLKYKDLFSSPDVKLDLGTAQGYASVKVTNGTYVSKNNDKLRNLTFDLLFTHNNQRQKG
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