Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0005011 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034082 Open in IMG/M

Scaffold ID

Ga0335020_0005011 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8507
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8507

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009875	Metagenome / Metatranscriptome	311	Y
F010145	Metagenome / Metatranscriptome	307	N
F021238	Metagenome	219	N
F025917	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0005011_1203_1853	F009875	GGA	MAAACNETVVGSSGDHVRDVALNVAARKVDDENDIYTFKRSDYTAEEWRWLFMTTGSDYYLNSLRLLGFCGVAGINWAVVTRMRKRDESSGEHYLAILPEDGYSILHYMRPQFRFLIYFGRGDKRVNLDARESVRFFDDAEKVVSGNASMWGSPVVVDGVPLLPDVECLVPSWLRQEFLVRTSGLGVSEDQHYVYPGVRGPLLLPSDYIRKYLFLF
Ga0335020_0005011_3129_3980	F025917	N/A	MLDDLCYFFFCFSCSGWGIRPCGGVIELDLVAKMRSDEGSDDNFFYGPSVMVPSREPFANERHLLGDSRYHACGRYADLEKKFFGENEAILREIFFDTNNLLGVDSEEDLDVEVSVNYHDLVPEILSEEGQLRRDGVKEILETKIVRLSPVNLEGEDGEIMERVASPMVVETVSDFVDAGVATCSTDIGVNDQFCSKIAAKPDCVEKIVIGRAKLPSDPGPFSEDVSMDDFMPRTRRGSVLFLTFCEPAGGEVSVYFKFLIQWCILFCYILGSDKRYLCDDRF
Ga0335020_0005011_4749_4970	F021238	AGGAGG	LLEQTQLEHRRLDIETRIEELESDVRALKDNHVMLEHGEKKDAIFSEICGLDSQIFQLKSELATVNSLLSAYD
Ga0335020_0005011_6609_7187	F010145	N/A	MQIAKLTTSMEIQSDISIEYAAFSNALSLIPHMLHEIEESLLAVTNQAIYPSLLPAESILRTIPFYSKQSILSATISAVISSKMNTIEISVPEFINPFTVYYVKSIPFAHNTTDRIYATLNLENKYVALDPAGSTFLYKPEMCTTKNTITMCNPAMLEIHKEAQTCVEALMSPSQIGAKLCIDAIKVEKVNQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335020_0005011

Overview

Ecosystem & Geography

Associated Families

Sequences