NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0004392

Scaffold Ga0335020_0004392


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0004392 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9172
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029756Metagenome187Y
F085689Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0004392_6744_6953F029756GGAGMNKRKITTRVMLDGVVDSTFTQMRQVYTDDKGEYVNCNRNKYYIENDSFNIVYTTGRAYSFAQVLKDLV
Ga0335020_0004392_7672_8067F085689AGCAGMKLTDYSRNLLLATFAKWDVPKDFADPMYNYLVHGFNPGSFFTSVLANDFHSAIARSHPSNTINACKSLGGWILDHAPRESHGSYNNVEVWCSLPADVRRTILEDYNLVYSEQQEIMLALQGQSTAEPMLY
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