Scaffold Ga0335020_0002122

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0002122
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13609
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003522	Metagenome	481	Y
F004950	Metagenome	417	Y
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0002122_1246_1641	F093530	AGG	MALSFVSNAMRNAYASHTDFGFLKGVILDNPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLVINGYSDDTGTEVDKFYKVTQDKLVILGNGIEGLKDYIDAWYQSSNGVSSE
Ga0335020_0002122_9284_9493	F004950	AGGA	MGKGSGRRPLLISEQEAQDNWDKIFKKEKNSPDVSPHTYEYELNKSTGDVEKRFKDGISKPNESQFDGN
Ga0335020_0002122_9797_10147	F003522	AGGA	VNTRDKILAYLTEPKAIKEIAAHVDGNYHTIKNLLVTMKMEGHIHAFKDNDNRLMHYYIPQPHPLQAIFGHTANFTEDQIKGVINHNADDAKHNLQQRTTQETFGQSVAYTLTQYD