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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0001735 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15158 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (26.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001055 | Metagenome / Metatranscriptome | 791 | Y |
| F006659 | Metagenome / Metatranscriptome | 367 | Y |
| F105031 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0001735_13084_13515 | F001055 | N/A | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPKAVVLCESARSPADLPEGEGNFSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDAACYDVTMQSEDEGIDERSWATSFAFDVLVVLPA |
| Ga0335020_0001735_2210_2494 | F000957 | N/A | MSNFRHLDGMVALLSEIYEINERIMTGDICSNKTAIASGRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV |
| Ga0335020_0001735_2487_2741 | F105031 | N/A | MTIIRPNTKPPLWWLFPWSYAQTLHMAANALKALCDRQDDALTLQAHIIADQSEEIANLRQHIRILDDAIVRGRAITPDAQPHE |
| Ga0335020_0001735_753_974 | F006659 | N/A | MKKDPKLPADYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKAEVTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |