NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000358

Scaffold Ga0335020_0000358


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000358 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36160
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (74.55%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F011761Metagenome / Metatranscriptome287Y
F020635Metagenome223Y
F028717Metagenome / Metatranscriptome190Y
F040626Metagenome161Y
F042895Metagenome157Y
F058142Metagenome / Metatranscriptome135Y
F058146Metagenome135Y
F079592Metagenome115Y
F101171Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000358_14485_14802F079592N/AMIEYTYKLYRDDDEQLVVTVDPLVKDIETSIEAMMNMNVDDLSDENKQIFEMKILGLRTIHQFLGALQQEQYLKEYKQGLTTELKGQVTIDTGQVIDSITKGALH
Ga0335020_0000358_14799_15167F042895AGGAGLSEFKGIIDKPFYVGHIKNFDKMVTELSPFMNETEIDQCISFMHTLTDTKNDINPSPEDCKTQLQIMFGRDRFLELTQQWGKKNQKFLSVFGALKYKDKRDGKFYDGLDETDNVDDYEKVYI
Ga0335020_0000358_19954_20730F028717AGGAMDQQSFVGNDSQTNTNQSVETQEGGNEQVNAGAIRKSTTQGLLTALSNASGTQFTSVEDALAYIARTSAQQLGGNAQPVEQPKVQPSSGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDKFDSDLIDYALNKVKSNIQWNDDGTYAIVNQKGQERYGSDGMPLTIQGLVQEVAQGNPKLLRQSNSNSGSGLRPGQGSFTGALEETIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSASVSNSSRKVL
Ga0335020_0000358_20762_21817F011761AGGAMAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNPNGANGTFGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPSNTYYATSADGFDRVLQLGAMELLGAGTPANTAGWTTGFSSAQVLELVRNVKQNFKVARMPGAPVIVLDSNGYCTENVPGSAGGSGSSLTRLLAELTGGAVSQSGGSNLSALGNELLTTGKIESVYGCMIMFTTFLQPTNRILLGQASASSVLVGAYMGDSAIFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQD
Ga0335020_0000358_21877_22404F002260AGGAMSVPYQRISNATVEDIQFYDPAAERRASALQVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYEFAKKRCEDEWTKALQLMNFYDLYMDNPQGPTTKLEENWTADVDYFNGDRRYF
Ga0335020_0000358_22404_22847F058142AGGAGMAAVILNAPTVNTTQIIDVLKRDIPRTWSVPIYDDFPSDDEKVRYGIYVSDVHTNSRNPHQLGIQYCGAIYHAFDVFDVTYISYQDDPYNLDVNAIVANLVTALKDDGQQLMEGYFERNFNQVRTYGPTQAEKHVWTFELTRLEFNT
Ga0335020_0000358_23442_23627F003807N/AMTQEQVWYKTSEEKLRSLIADEAKMMPMLDNMMATIKQLKAKQAFRLALLNQLLEDLNEN
Ga0335020_0000358_23659_23955F058146AGGAMKLSQLTAKPQLIDIHIDDEDTIKEFGEPIEFWTWDRQPMDVFMKLANASGQDTSGIIGIVRTLILDEKGKEILKDDQMLPTHVLMKAIAKVTELLGK
Ga0335020_0000358_23994_24209F040626N/AMILTIDGLGKRYGMLPSEVLRRSNTFDLYIMDAAMTFENYHHKKAANNGREPIPDFTTDELQQLLDKSKEQ
Ga0335020_0000358_27666_28343F101171GGAMDNIPAVANNKPLVNNAEFVKLTIYNEYGNTANNNVYTFSSSYQSETIDGQVYTPLGGLLAVGVQQRDIRVTSADTSISLSGIDGNNMAIVLGSLIRGSQLEITRGFYDNNYNLTSNAHRFTGIVTNYNISEERQDNDDNFTITLNASSFKTVLENRIAGRKTNSESWKEYNPTDTSMDRVPSLSDRAFDFGKPPVQVATTQSQAQTDASQISQDTNTNVTDASP
Ga0335020_0000358_3522_3707F020635N/AMEFTLKQISWIVIGSLGLGGTGYMTMNSKIDELAVKVAVVHTEVNNLTKQLDRIEEKLNT

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