Scaffold Ga0335020_0000358

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000358
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36160
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (74.55%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F020635	Metagenome	223	Y
F028717	Metagenome / Metatranscriptome	190	Y
F040626	Metagenome	161	Y
F042895	Metagenome	157	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F079592	Metagenome	115	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000358_14485_14802	F079592	N/A	MIEYTYKLYRDDDEQLVVTVDPLVKDIETSIEAMMNMNVDDLSDENKQIFEMKILGLRTIHQFLGALQQEQYLKEYKQGLTTELKGQVTIDTGQVIDSITKGALH
Ga0335020_0000358_14799_15167	F042895	AGGAG	LSEFKGIIDKPFYVGHIKNFDKMVTELSPFMNETEIDQCISFMHTLTDTKNDINPSPEDCKTQLQIMFGRDRFLELTQQWGKKNQKFLSVFGALKYKDKRDGKFYDGLDETDNVDDYEKVYI
Ga0335020_0000358_19954_20730	F028717	AGGA	MDQQSFVGNDSQTNTNQSVETQEGGNEQVNAGAIRKSTTQGLLTALSNASGTQFTSVEDALAYIARTSAQQLGGNAQPVEQPKVQPSSGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDKFDSDLIDYALNKVKSNIQWNDDGTYAIVNQKGQERYGSDGMPLTIQGLVQEVAQGNPKLLRQSNSNSGSGLRPGQGSFTGALEETIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSASVSNSSRKVL
Ga0335020_0000358_20762_21817	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNPNGANGTFGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPSNTYYATSADGFDRVLQLGAMELLGAGTPANTAGWTTGFSSAQVLELVRNVKQNFKVARMPGAPVIVLDSNGYCTENVPGSAGGSGSSLTRLLAELTGGAVSQSGGSNLSALGNELLTTGKIESVYGCMIMFTTFLQPTNRILLGQASASSVLVGAYMGDSAIFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQD
Ga0335020_0000358_21877_22404	F002260	AGGA	MSVPYQRISNATVEDIQFYDPAAERRASALQVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYEFAKKRCEDEWTKALQLMNFYDLYMDNPQGPTTKLEENWTADVDYFNGDRRYF
Ga0335020_0000358_22404_22847	F058142	AGGAG	MAAVILNAPTVNTTQIIDVLKRDIPRTWSVPIYDDFPSDDEKVRYGIYVSDVHTNSRNPHQLGIQYCGAIYHAFDVFDVTYISYQDDPYNLDVNAIVANLVTALKDDGQQLMEGYFERNFNQVRTYGPTQAEKHVWTFELTRLEFNT
Ga0335020_0000358_23442_23627	F003807	N/A	MTQEQVWYKTSEEKLRSLIADEAKMMPMLDNMMATIKQLKAKQAFRLALLNQLLEDLNEN
Ga0335020_0000358_23659_23955	F058146	AGGA	MKLSQLTAKPQLIDIHIDDEDTIKEFGEPIEFWTWDRQPMDVFMKLANASGQDTSGIIGIVRTLILDEKGKEILKDDQMLPTHVLMKAIAKVTELLGK
Ga0335020_0000358_23994_24209	F040626	N/A	MILTIDGLGKRYGMLPSEVLRRSNTFDLYIMDAAMTFENYHHKKAANNGREPIPDFTTDELQQLLDKSKEQ
Ga0335020_0000358_27666_28343	F101171	GGA	MDNIPAVANNKPLVNNAEFVKLTIYNEYGNTANNNVYTFSSSYQSETIDGQVYTPLGGLLAVGVQQRDIRVTSADTSISLSGIDGNNMAIVLGSLIRGSQLEITRGFYDNNYNLTSNAHRFTGIVTNYNISEERQDNDDNFTITLNASSFKTVLENRIAGRKTNSESWKEYNPTDTSMDRVPSLSDRAFDFGKPPVQVATTQSQAQTDASQISQDTNTNVTDASP
Ga0335020_0000358_3522_3707	F020635	N/A	MEFTLKQISWIVIGSLGLGGTGYMTMNSKIDELAVKVAVVHTEVNNLTKQLDRIEEKLNT