Scaffold Ga0335020_0000282

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000282
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40880
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (70.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F003265	Metagenome / Metatranscriptome	496	Y
F004695	Metagenome	427	Y
F012214	Metagenome	282	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000282_13506_13784	F003265	N/A	VRWLLLLPFVLLVNAKSPCTIAEFYGISWLGDPSLRHSQLSMWLSINGDNCSSDKLVIIWNNLAMWAGTADSSELRGKVLYFYSKAIEREKK
Ga0335020_0000282_28325_28867	F001915	AGGA	MEWTLAHPLHDVDDIVNMADSIFGHEADGILTRDKAVFRKHVTVATTVQLFDKSKEFIAVCRGHRKFDTYLGPAETQDELLGYCWFDRGGYTTYANEEISNAKFHHVDLQLSPRLRVRLINEMIDQHILWAYQWGIPVVCSTSIRAEHDGFMKIHKKRGFAVNGSYAWIRTEKGMECLKK
Ga0335020_0000282_28852_29367	F098944	AGG	MFEEIRPEGSTVTSEEIKQRARDYAKAKRAQKKAMKLATGQIEPKEAIETVQVVDEFDMTAFVPRSQKQAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNDFMESLRKV
Ga0335020_0000282_32355_34526	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRTFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDETEAIQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTINTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAGTCLKGAPFMDALSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQASKGPSAEQQETQSKVALNNAKVEESGSVTALNIRKAQDIDTDDMFEALAAKRGKLSSVQVD
Ga0335020_0000282_4047_5627	F012214	N/A	MSFTPDVPSNALGPNEYNSGKNVEADVRSIKKIFGEIQIASTIPDMPIFMEGGFRSETSWVYIVATRNASSQGKWYMITSTGITNITPGVGANPSVFLPNYTEDINITFASVGNVFFINDTLTNPMYFLPTSNEITVTSDAAWNYEPGVTSTRAGFVRNYCSPNVGNILIAGNITKVIGGTTYNYPTTVRWSQAFALQGYPTTWEPTLSNVANEQEVPVRGPLIDGFFLGGSFYVCSYWDTVVFSPISYQNSTAPIFGLRLLNQGRGLLNNNCWTNTDGNVYGVDARDIWMFNGSEFVSLGNQKVKDYFFSNLSPLYQNRIFMVNNTSKYQIEIYYPDLTSTGWCNKMLSWRYDLQVWNAPKDIQNACMGTEGPRWIDSSPDYYNLASRATVYAKGGVSSSRLIETAITNAFVGSAIDSQFERTNVALQTSNGPVPYSNKVYVHRLLPEIAGTGKISISVGGANSTAQAPVYGEVGTTIIDTDTPWVPTQQNSVRTVAVKFSSNDATDTWKMSAMNWQATVTEDAF