Scaffold Ga0335020_0000206

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000206
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46629
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (70.83%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F026542	Metagenome / Metatranscriptome	197	Y
F044533	Metagenome / Metatranscriptome	154	Y
F099177	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000206_14697_15197	F026542	N/A	MEKLQELLQNFLGPQLKEVIEAYADVEKSSKYFVEIPEVDIIDLGIETIASLVARTSNVYGRAARFAGMSRAQYKIIEGNYKRVYKSNRAGKNEAEREASAMAAAESQHTEMITCEAIMSLAEAMETSARIASESARKLMDKMQSMQVAAFREEKGSYLESDFSTY
Ga0335020_0000206_15212_16072	F099177	GGA	MTAYKEQYYSLEENEMQDLIAKAKKGSAKAQEELLKVFSNFLTKYISLLYYGKFNLNDYDIRRFISLFIKDSGTRFALMKNKMNGSNMRVINECMRGIHYMAKRYGDEEDIRQTVYMTFFQCIGRYERKDSAKGPIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLDDDATNDEGDENYVIGFKADPVEYSMEQLLAADKIDEFWVLGEKNIAPFDRLTVQERQLLKWRYVDGQRSSEISQKVNEHPNTVREHLSKIKNKVKDLIIENDLSEYAMLINMEKN
Ga0335020_0000206_18158_18523	F004789	GGAG	MSADRPSVNPTDKWCWVFCPSCNRCQDKGRYTKCNGCSGRYDPELIIKADNEDFCDCKNGTLRWKTQQGRLVMARFKSNPFKSEVKYEKKSGDERDWDSYVKDMREKLNDPKWDPITYYE
Ga0335020_0000206_21847_22053	F012571	AGGAGG	MPEIEDTDDVIGVCSECKSDQPERYMYNSPFAQEGKPVPCKYCGGVVIITYREVRDSSLEGSDKSRGI
Ga0335020_0000206_35931_36179	F044533	N/A	MFGTPLILEKDDKKSGAIAWGGLALGIIVYDIYAIKSKKIETLTRAFWRHTENKITGSIFTGVWLGLTFHLLIEKLIRKNFS
Ga0335020_0000206_36181_36810	F007312	AGGAG	MATFYVGPRPVLKGRTTAGMVNPYTSMTGKAKGTGTYSFYPLYSTSHVLDGAPDNHFAPGTGQFPGNRFLSQLFNGTTLYIHPLSGTFQDGAQYDGARFRPQEFKGLAGASAFPSTFGHAINRSNDYALYDNYIFDGVPSANIFANTGHAQRTEAQGAPSSFGFFQPNEFKGVPSTVVFTSGYGQANTTGDYGREKVKEFNGVASAKAL