Basic Information | |
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Taxon OID | 3300034082 Open in IMG/M |
Scaffold ID | Ga0335020_0000206 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 46629 |
Total Scaffold Genes | 72 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (70.83%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004789 | Metagenome / Metatranscriptome | 423 | Y |
F007312 | Metagenome / Metatranscriptome | 353 | Y |
F012571 | Metagenome | 279 | Y |
F026542 | Metagenome / Metatranscriptome | 197 | Y |
F044533 | Metagenome / Metatranscriptome | 154 | Y |
F099177 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335020_0000206_14697_15197 | F026542 | N/A | MEKLQELLQNFLGPQLKEVIEAYADVEKSSKYFVEIPEVDIIDLGIETIASLVARTSNVYGRAARFAGMSRAQYKIIEGNYKRVYKSNRAGKNEAEREASAMAAAESQHTEMITCEAIMSLAEAMETSARIASESARKLMDKMQSMQVAAFREEKGSYLESDFSTY |
Ga0335020_0000206_15212_16072 | F099177 | GGA | MTAYKEQYYSLEENEMQDLIAKAKKGSAKAQEELLKVFSNFLTKYISLLYYGKFNLNDYDIRRFISLFIKDSGTRFALMKNKMNGSNMRVINECMRGIHYMAKRYGDEEDIRQTVYMTFFQCIGRYERKDSAKGPIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLDDDATNDEGDENYVIGFKADPVEYSMEQLLAADKIDEFWVLGEKNIAPFDRLTVQERQLLKWRYVDGQRSSEISQKVNEHPNTVREHLSKIKNKVKDLIIENDLSEYAMLINMEKN |
Ga0335020_0000206_18158_18523 | F004789 | GGAG | MSADRPSVNPTDKWCWVFCPSCNRCQDKGRYTKCNGCSGRYDPELIIKADNEDFCDCKNGTLRWKTQQGRLVMARFKSNPFKSEVKYEKKSGDERDWDSYVKDMREKLNDPKWDPITYYE |
Ga0335020_0000206_21847_22053 | F012571 | AGGAGG | MPEIEDTDDVIGVCSECKSDQPERYMYNSPFAQEGKPVPCKYCGGVVIITYREVRDSSLEGSDKSRGI |
Ga0335020_0000206_35931_36179 | F044533 | N/A | MFGTPLILEKDDKKSGAIAWGGLALGIIVYDIYAIKSKKIETLTRAFWRHTENKITGSIFTGVWLGLTFHLLIEKLIRKNFS |
Ga0335020_0000206_36181_36810 | F007312 | AGGAG | MATFYVGPRPVLKGRTTAGMVNPYTSMTGKAKGTGTYSFYPLYSTSHVLDGAPDNHFAPGTGQFPGNRFLSQLFNGTTLYIHPLSGTFQDGAQYDGARFRPQEFKGLAGASAFPSTFGHAINRSNDYALYDNYIFDGVPSANIFANTGHAQRTEAQGAPSSFGFFQPNEFKGVPSTVVFTSGYGQANTTGDYGREKVKEFNGVASAKAL |
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