Scaffold Ga0335020_0000090

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0000090
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68525
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (72.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005562	Metagenome / Metatranscriptome	396	Y
F038232	Metagenome / Metatranscriptome	166	Y
F100404	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000090_37412_37543	F005562	AGG	MTRPNIQIDDEVREMTEEEYADLLASGWTEVAENNIAEEWTGE
Ga0335020_0000090_51958_52413	F100404	GAG	MAEELLEDEDNDFTRTPDFHKIHQKLISLVNPDNHRAASSVIYGHYKNWSPVKTMKYYNVSENEYEQYAGMFNFKERMVKQMTGRKSKQDNIVNFLNGNVGKVVTPVQLATDVQISLPTFYNFYNANRGYFKKVKRGHFEILNPKEERVSI
Ga0335020_0000090_67581_67742	F038232	N/A	MDGVRMNKIDGNQLRSKLEKLMPHCSLDEDNEGQVIIYTNLKETTNGNYKELK