Scaffold Ga0373900_025553

Overview

Basic Information

• Taxon OID: 3300034078
• Scaffold ID: Ga0373900_025553
• Source Dataset Name: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 993
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location

• Location Name: USA: Oak Ridge, Tennessee
• Coordinates
  • Lat. (^o): 36.0103
  • Long. (^o): -84.2696
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072973	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373900_025553_663_953	F072973	AGGAGG	MKKNIFFVLCLGIFLLLPNLSLAECTDLGGFTNFSLQGGNTVVLYSGSRPVASFDSNCSIESSSKIELVKSYVCDGEEILVDGERCTIMEIKPLGP