Scaffold Ga0310130_0062771

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0062771
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y
F074582	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0062771_623_823	F014016	AGAAGG	MINKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKEQLRGRLSKAEISAYWLDKYGVNADVA
Ga0310130_0062771_813_977	F014613	N/A	MLPNLSDEAVAGIVIGVPFIGLYIWSLWNSAKAKAFNQGYKRGRASVRYTEIIK
Ga0310130_0062771_949_1104	F074582	GGAG	MDTQRSLSDWINDAGDTLFDRGVEYGDPRHNFLRIFKISKALGIQLRDPSD