NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0033237

Scaffold Ga0310130_0033237


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0033237 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1581
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007111Metagenome / Metatranscriptome357N
F007855Metagenome / Metatranscriptome343N
F009126Metagenome / Metatranscriptome322N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0033237_1134_1580F009126N/AMATTVLSGSPLVATPVYNKMLFKVSGSQIAQPNYRYVCDVKNPAGTTLARLKCDKLPSTNYGFFDVAKVVETLIAPTKPSLTQTGFVDHAGYYSGYRLDFMEEYGNTPVVYTGTVTTVSSNVSFAGNLEQLEFQDWAISPYFRIGQSFP
Ga0310130_0033237_2_274F007855N/AMDINTTDEKQLLQNLHRIMASLSREGGLFGFFPKKYDGAAHAERAELFKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAEGLT
Ga0310130_0033237_482_1132F007111GGGGGMETTILANGQPVGKFGSGSMKGIDQTALEGIGSIVGPKGGGKSPAHDVLVKWVARVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDRGVHGRTSSYLSVRDSKFKYKDKIPPPQAIADWIANKGIPVIPTYSRKLKRMRTKQEQGLVDGRSIAFGIRERGLEATNFMSNALSPEMIEVLTENIAEVLGKSISIATKL
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