Basic Information | |
---|---|
Taxon OID | 3300034073 Open in IMG/M |
Scaffold ID | Ga0310130_0015337 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2539 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000744 | Metagenome / Metatranscriptome | 909 | Y |
F002243 | Metagenome / Metatranscriptome | 578 | Y |
F027765 | Metagenome / Metatranscriptome | 193 | Y |
F048268 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310130_0015337_1068_1250 | F027765 | N/A | MNEEDVMEFIQAFEDFMKHSEVEQFNHEAWVCAKQYTHHFYEQRAADLNITVDYYIQEFI |
Ga0310130_0015337_1369_1632 | F002243 | GGAG | MSNFPTLQSKDGTMVVNYYPVKTPYGDISTEWCLQVLSWEGVNQISKKFLNRVEKSLAIRERLALGYTETGDNSNLPQLGNPFHGAC |
Ga0310130_0015337_1666_1872 | F000744 | GGA | MMTETQVNLNVHEIGVILSALQLLDARDENLIAREYGSVPALYNKLYTLYERMDSSQTGLRNDVVPSF |
Ga0310130_0015337_1869_2072 | F048268 | N/A | MKLSTQSVTKIADALKPAVINYIYEDPEFAEYMHGAVIEGIRGVMGDMDDDLLFEIGMLVFDRIEMK |
⦗Top⦘ |