Scaffold Ga0310130_0015337

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0015337
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2539
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F027765	Metagenome / Metatranscriptome	193	Y
F048268	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0015337_1068_1250	F027765	N/A	MNEEDVMEFIQAFEDFMKHSEVEQFNHEAWVCAKQYTHHFYEQRAADLNITVDYYIQEFI
Ga0310130_0015337_1369_1632	F002243	GGAG	MSNFPTLQSKDGTMVVNYYPVKTPYGDISTEWCLQVLSWEGVNQISKKFLNRVEKSLAIRERLALGYTETGDNSNLPQLGNPFHGAC
Ga0310130_0015337_1666_1872	F000744	GGA	MMTETQVNLNVHEIGVILSALQLLDARDENLIAREYGSVPALYNKLYTLYERMDSSQTGLRNDVVPSF
Ga0310130_0015337_1869_2072	F048268	N/A	MKLSTQSVTKIADALKPAVINYIYEDPEFAEYMHGAVIEGIRGVMGDMDDDLLFEIGMLVFDRIEMK