NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0015337

Scaffold Ga0310130_0015337


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0015337 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2539
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F002243Metagenome / Metatranscriptome578Y
F027765Metagenome / Metatranscriptome193Y
F048268Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0015337_1068_1250F027765N/AMNEEDVMEFIQAFEDFMKHSEVEQFNHEAWVCAKQYTHHFYEQRAADLNITVDYYIQEFI
Ga0310130_0015337_1369_1632F002243GGAGMSNFPTLQSKDGTMVVNYYPVKTPYGDISTEWCLQVLSWEGVNQISKKFLNRVEKSLAIRERLALGYTETGDNSNLPQLGNPFHGAC
Ga0310130_0015337_1666_1872F000744GGAMMTETQVNLNVHEIGVILSALQLLDARDENLIAREYGSVPALYNKLYTLYERMDSSQTGLRNDVVPSF
Ga0310130_0015337_1869_2072F048268N/AMKLSTQSVTKIADALKPAVINYIYEDPEFAEYMHGAVIEGIRGVMGDMDDDLLFEIGMLVFDRIEMK

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