Scaffold Ga0310130_0011323

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0011323
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3098
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F004115	Metagenome / Metatranscriptome	452	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0011323_1173_1367	F002241	GGA	MSKPHSIRYIRQLMEWGFDKEFIAKDCGINLASLETRLRRQEERERKNGNQGTKPGTSSSQPNS
Ga0310130_0011323_1524_1859	F000545	AGG	MRSDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPSDRVTAKEDDIVRCDQCGKWKMKATKCRICRLAAGLEEISERYWTGNETKERPYNAAL
Ga0310130_0011323_2037_2624	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGALGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVTAIADQLGAEIIDEIPLCSGGDGPMVLKQGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK
Ga0310130_0011323_2608_2952	F004115	N/A	LDTPLSWVDYDFQHQKIGTTLSLTRNHNTNQYCDYCKYRWGQNKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKQQLEDAISDFAGREKLDVELP