Scaffold Ga0310130_0005541

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0005541
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4920
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F018913	Metagenome / Metatranscriptome	232	Y
F036765	Metagenome / Metatranscriptome	169	Y
F090316	Metagenome / Metatranscriptome	108	N
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0005541_1087_1308	F008943	GGAG	MKNFDELDWIVLSVFFIIIVAATSITYSEQQQRTLFQQTYNKNLECRQALKDQTVGRVNEICGAVPVIGDFVK
Ga0310130_0005541_3283_3513	F099191	GAG	MKRNNFDFMDAWSVLIVVSVGFVLLAAPITGVVKVITTQQALNEQCGTNYNFFQVATAGDNLSRLCQIKNQTVTIK
Ga0310130_0005541_3510_3836	F036765	N/A	MTIKATELLKLFAKADKLDLSVKVREDKDGDYVVRIYEMFRPEKFEEKVFITQNGESNWNKGSYSFDAMMDVLDGMLEEKLLEEIKARKRQELLARLTDEEKELLNLK
Ga0310130_0005541_389_520	F090316	N/A	MPDDLQREEELFLKVLKEYKEKKTQEPTDKTTNTLPAVIAAVL
Ga0310130_0005541_699_923	F018913	AGGA	MTNQQRAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKIDFTDELDVMFNNGWDECLKEIDAICDELELL