Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0004487 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0004487 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5674
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5674

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009603	Metagenome / Metatranscriptome	315	N
F028809	Metagenome	190	N
F050365	Metagenome / Metatranscriptome	145	N
F076018	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0004487_3072_3575	F028809	N/A	MNEVLNCQKPAGIEALRQNRIALKAIERQTGFEFLGISNDEPSRIDGFIHDPARGILVGSYEVKTRNYGLTKLQTTYGNRWMISWSKLQAALLITKELRIPFFGVLHLFDDDLVMMVEIFNRNATWAANHQATDKTVNGRSERVALIDMTGAARYQIKSGQIIEELF
Ga0310130_0004487_4767_5420	F050365	N/A	MTQTEYCKHSGLSKGRVSQLVANGMPLTSPEEADAWRGSRKGIGGRPSNAQKLAAIQQQESVFNEAAASIPDGPHRPPEAAATINQSIVASDTPAGAYERQKQIERASYGLAVQALRNKTMDAGRMVGVHAVAAKNLMNARQDVIALAEKEKTLVSGSWVKRVMQDHDGAVASLLKAMPKQLAGRIAPHDPEHAERELERWVQEVCLKTLHSTDPWK
Ga0310130_0004487_5417_5629	F076018	N/A	MSLATDYLLLNIGHSTLKWHLSRIKSGSFTVDQVAAFYQSDPKQPTYNTVKRGLKELLKMKPDELPIMLQ
Ga0310130_0004487_789_1124	F009603	N/A	LTLLQALTAKLTVAANTLESGQLVRSTSSSDVSVEFAEPGKGSASAGEMLEMWESLLSDYDYAVVLLNGDGITSPSDLQIYNKMLGSVLVATTRYYGDFTQFRREATTRMS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0004487

Overview

Ecosystem & Geography

Associated Families

Sequences