NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0004205

Scaffold Ga0310130_0004205


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0004205 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5917
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014496Metagenome / Metatranscriptome262Y
F015208Metagenome / Metatranscriptome256Y
F091432Metagenome / Metatranscriptome107Y
F091920Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0004205_1844_2101F091920N/AMRNRFRVEIYDENKLNDLTIYSEQGVDKDYLTEIVFSNLTRFSGRVKAYVYDELKKKKTVALVLPEETVNKYKPKQLTRIELGLI
Ga0310130_0004205_4164_4370F015208GGAMYKITIAYDENAPHWNKEISDELEAHETFAEFTDWGFADEYSTVNLFTPSGKCYTKIFYREGRRVVKK
Ga0310130_0004205_4636_4833F014496AGGAMNTYSIPDLLVGQTYYPRSLARKYQYGEITFAEKRDDIYLSEEYQAFAIRFNGNRWATIAVKVAD
Ga0310130_0004205_4835_4972F091432GGAMDLKEFRDLIIAQRLAENKEKRNNNLTAILSVANATITETTRKEN

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