Scaffold Ga0310130_0004205

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0004205
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5917
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014496	Metagenome / Metatranscriptome	262	Y
F015208	Metagenome / Metatranscriptome	256	Y
F091432	Metagenome / Metatranscriptome	107	Y
F091920	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0004205_1844_2101	F091920	N/A	MRNRFRVEIYDENKLNDLTIYSEQGVDKDYLTEIVFSNLTRFSGRVKAYVYDELKKKKTVALVLPEETVNKYKPKQLTRIELGLI
Ga0310130_0004205_4164_4370	F015208	GGA	MYKITIAYDENAPHWNKEISDELEAHETFAEFTDWGFADEYSTVNLFTPSGKCYTKIFYREGRRVVKK
Ga0310130_0004205_4636_4833	F014496	AGGA	MNTYSIPDLLVGQTYYPRSLARKYQYGEITFAEKRDDIYLSEEYQAFAIRFNGNRWATIAVKVAD
Ga0310130_0004205_4835_4972	F091432	GGA	MDLKEFRDLIIAQRLAENKEKRNNNLTAILSVANATITETTRKEN