NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0002950

Scaffold Ga0310130_0002950


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0002950 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7533
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051073Metagenome / Metatranscriptome144Y
F078627Metagenome / Metatranscriptome116Y
F101274Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0002950_4164_4421F078627GGAGGMKHLIQSFQSHVGERGCHFYDGEHCNFLSWKEVFTFIDTLPKRGGEDPFTERLTETLANYNPDSEFLAVQQNGDSVSVELYSQAQ
Ga0310130_0002950_5566_5778F101274AGAAGGMIPPRMFPPGVLQLFEVLDGEKTLIQELPTSSKNRDRINQMRNDMLMVNPTRNLVVSENNSFNPPRGKTK
Ga0310130_0002950_6035_6301F051073N/AMTFDLIKGSGSWAMTTVRIDERNASCQVWWCEGKQEWHWSLVWEDGGPWGTHMHNGIAPTKAQARADITKTIIWIEDKWPTLEYFEGA

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