NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0002624

Scaffold Ga0310130_0002624


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0002624 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8268
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (35.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005382Metagenome / Metatranscriptome402Y
F036146Metagenome / Metatranscriptome170Y
F059774Metagenome / Metatranscriptome133N
F085396Metagenome / Metatranscriptome111Y
F098941Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0002624_2421_2660F085396GAGMTRTPFLTRSQRAIARMVKDAGYSLSSYSRDDRSAARSKLLALVHKASKHAPASQPNKRTKAFFLTLADSMQDDIWRFL
Ga0310130_0002624_3316_3657F005382N/AMASLVDKTSIIKKFVFDAGSSIVNVRFIKADGTERSISFNPRDSKEIKGERSQSDRPKGTAEPFHGTGTAVKKPSIIRCRDFTIARTAGEGAWRSFDCERVLSIKANGQTLVF
Ga0310130_0002624_6824_6997F059774AGGAGMVFFTDGDYDNDPELDWERPQGLNRQLSLQQLEGRLELWKQKHELLCLKLYRAATGI
Ga0310130_0002624_7000_7350F098941GAGMPFLFKAMTAKFYHWGEKLSAFTSDDRLVMSFGSPIASVPIKVKELQDFVCTLEQAIDDEPNVKQRIALGSIKHIFQASLKQAQKDHEQIVEEAPTGADLEEYMLSYSRAIKEGAF
Ga0310130_0002624_8012_8188F036146GAGGMTPCRTWKITTSEGKTIALGAMSPKQAEHFMLAMRPDIKIALIEEIKPLPEDLHEELQ
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Bioinformatics & Integrated Biology Lab
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