NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001637

Scaffold Ga0310130_0001637


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001637 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11744
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (29.03%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033013Metagenome / Metatranscriptome178Y
F079978Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001637_7642_8013F079978N/AMSLLALKLWAATSFTTEMKIYAPELSGTYVWQVADPKSSKTSFAPSKSMNPPPNCCYGHPLGRYDSDGCYWTFCPNAGEDAIDKRSRGRYMKHPQAEEEKNLAIKEKVWGRLENFGSYKETEF
Ga0310130_0001637_8870_9046F033013AGGMPITLKAKAQSTKTVMLQIDPVLHQRIKFIAKDHNMSAAAVMRQILEQGIQQVEEARA

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