NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001598

Scaffold Ga0310130_0001598


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001598 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12001
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020882Metagenome / Metatranscriptome221Y
F031493Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001598_2659_2865F031493GGAGMRNFAKDGPPKYRKPEPLHKGWHYIGDGKFHDPSLGSDPMRGRRWMIDPGAGSGKSFEKFQQGIKNGQ
Ga0310130_0001598_2867_3409F020882N/AMSRLQELGDTGDRMMQGLPYGQGGAIAGAVEPGVLDTFSSPEVAQNPNQFGTLIDKSKITANAKDSMSKLMPFGPYTGQNPEDYVKDVEQIKYKVTPDEVIMGIDYEMKKLVLKDKQVAKQNVVNNLKKDHQYYSKLHMLGIEDGSDKKEPEDFRTPQEKAIAEIMRDLHEKKKQRRNWS
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