NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001375

Scaffold Ga0310130_0001375


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001375 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13371
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (35.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F014486Metagenome / Metatranscriptome262Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F022820Metagenome / Metatranscriptome212Y
F035200Metagenome / Metatranscriptome172Y
F037078Metagenome / Metatranscriptome168N
F086551Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001375_11285_11707F037078N/AMKNNQLNITMQPFGNTTAFLLEGDKNHIENFHNAMYNHSATNGELHDMGNGKAFYFYAQPEAVLEAMTKVALYALCNKIKAKGLKGGLLSLAKQKAQDKFDAIKDGRFLRTAISTDVFNLGSITAEKPSDYCGAISSGRD
Ga0310130_0001375_1649_1804F020860N/AMEITKAKKLAEGGYALYAIDPKTKTETQVGYIGGNLSLEAWIPKGVKIENS
Ga0310130_0001375_1791_2150F016115AGGAGLKILEESFTSKGFKLQQVKRDGDIAIYKKQLDDPECENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTSIEDANKRFNELQEKLTNYNATSILPSGEKRGRGRPRKIA
Ga0310130_0001375_2182_2418F010746N/AMTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQVKKLKAVYAGDDGSNDIVICDNVDGGSLFDNEVAVEVENDI
Ga0310130_0001375_2408_2566F035200GGAGGMTSKFIVLRDGVRVSEDMHESEGQAEQEANFWREIIKRWPDGTKVTIKKIGG
Ga0310130_0001375_3349_3744F007359AGGAGMKHIKLYKQNLGAHWVIGIKGSKDRIKQFHNRVYNWGGTNGKLKWMSRDFAYFWITMDKLERVMFKYVMNGITDKLGEKFRGSKGGLKEVVMNRVMNTINKIPLENFVRTEQVEHTYSLGQVSAEKLDTDS
Ga0310130_0001375_4132_4293F022820N/AMKHENRISKIIEKRILKDEDPKLIAQIDKYLAELEVVFVKWAKAHPNWKESEE
Ga0310130_0001375_7005_7154F014486GGAGMNIEKLLNENLESFYPWSDNDNPPLDAGKNFLQKEKELDEFFEGWRASM
Ga0310130_0001375_9342_9545F086551AGGAMNIQINPELYENKNICRYGHDKLLVKIFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGLYPVDAQ

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