Basic Information | |
---|---|
Taxon OID | 3300034073 Open in IMG/M |
Scaffold ID | Ga0310130_0001375 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13371 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (35.00%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Associated Families | 9 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007359 | Metagenome / Metatranscriptome | 352 | Y |
F010746 | Metagenome / Metatranscriptome | 299 | Y |
F014486 | Metagenome / Metatranscriptome | 262 | Y |
F016115 | Metagenome / Metatranscriptome | 249 | Y |
F020860 | Metagenome / Metatranscriptome | 221 | N |
F022820 | Metagenome / Metatranscriptome | 212 | Y |
F035200 | Metagenome / Metatranscriptome | 172 | Y |
F037078 | Metagenome / Metatranscriptome | 168 | N |
F086551 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310130_0001375_11285_11707 | F037078 | N/A | MKNNQLNITMQPFGNTTAFLLEGDKNHIENFHNAMYNHSATNGELHDMGNGKAFYFYAQPEAVLEAMTKVALYALCNKIKAKGLKGGLLSLAKQKAQDKFDAIKDGRFLRTAISTDVFNLGSITAEKPSDYCGAISSGRD |
Ga0310130_0001375_1649_1804 | F020860 | N/A | MEITKAKKLAEGGYALYAIDPKTKTETQVGYIGGNLSLEAWIPKGVKIENS |
Ga0310130_0001375_1791_2150 | F016115 | AGGAG | LKILEESFTSKGFKLQQVKRDGDIAIYKKQLDDPECENYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTSIEDANKRFNELQEKLTNYNATSILPSGEKRGRGRPRKIA |
Ga0310130_0001375_2182_2418 | F010746 | N/A | MTYKCAVSGEAIPPERVEALQVLGVPEALWTKKEYSQVKKLKAVYAGDDGSNDIVICDNVDGGSLFDNEVAVEVENDI |
Ga0310130_0001375_2408_2566 | F035200 | GGAGG | MTSKFIVLRDGVRVSEDMHESEGQAEQEANFWREIIKRWPDGTKVTIKKIGG |
Ga0310130_0001375_3349_3744 | F007359 | AGGAG | MKHIKLYKQNLGAHWVIGIKGSKDRIKQFHNRVYNWGGTNGKLKWMSRDFAYFWITMDKLERVMFKYVMNGITDKLGEKFRGSKGGLKEVVMNRVMNTINKIPLENFVRTEQVEHTYSLGQVSAEKLDTDS |
Ga0310130_0001375_4132_4293 | F022820 | N/A | MKHENRISKIIEKRILKDEDPKLIAQIDKYLAELEVVFVKWAKAHPNWKESEE |
Ga0310130_0001375_7005_7154 | F014486 | GGAG | MNIEKLLNENLESFYPWSDNDNPPLDAGKNFLQKEKELDEFFEGWRASM |
Ga0310130_0001375_9342_9545 | F086551 | AGGA | MNIQINPELYENKNICRYGHDKLLVKIFPSTIGWKTKTATAEILEGEDKGKWTTIYMRKGLYPVDAQ |
⦗Top⦘ |