Scaffold Ga0310130_0001243

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0001243
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14518
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007025	Metagenome / Metatranscriptome	359	Y
F013505	Metagenome / Metatranscriptome	270	Y
F022611	Metagenome / Metatranscriptome	213	Y
F091611	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001243_10159_10317	F007025	GGAG	VILVDFFSEDCCRGTELVEGWYFYADDDESFVGGPFTSEEAALKAAFDGHGW
Ga0310130_0001243_11585_11812	F091611	N/A	MPYSLIVDDEWGVPYALKTFETIQEVHDEIRTMDELLNQAGPGAAYVIRCIIDQLKEIVHEAEEEPETILDRPAF
Ga0310130_0001243_11816_12070	F013505	N/A	MGPQGPFSSLIMKHYPSYEARLEADRQAQHSGYGIQPYHCADGTIKWEAYGWERLSELSIHTTSYGIFDHKWQAEQYFNNIIHA
Ga0310130_0001243_4272_4463	F022611	N/A	MFNLPERQPFNYGGVKLWPCFSRPEFQWFAAIDGAPCYFRTLNEAKLFIKDRLSMEDAENLCD