Scaffold Ga0310130_0000912

Overview

Basic Information

• Taxon OID: 3300034073
• Scaffold ID: Ga0310130_0000912
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18208
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (68.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006660	Metagenome	367	Y
F050326	Metagenome	145	N
F099179	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000912_1395_2036	F050326	N/A	MTALSSSTITHSEFVRLVTSTNTYTFCSAAASITVSGITFTGLGSLLSVGDVQRDLKATSDDMLITLIGIDPTNVALVLANNIKGSTVEIWRGFFDSNYQIITTPSTQFFKRYQGIVNSVSLNETFDENNRSRTVACSIACASFRTILENKISGIRTNQNTWRALYSTDASMDRVDAIAGQYFDFGSPPKGGGLSDPNAGDQPNVYEQDLSGI
Ga0310130_0000912_2045_2635	F006660	N/A	MVGQQYSRSGQVRTALYVTSVPWVFTVRPHSFLYYPQVRDVIQTIDNLDRQTAATITFSSTNLQWFTTYQGQLSGAQAAALTLASVPAANATTISVGNLPTIASSTIVFKAGDFIQIGDYPYKVTAEVLRGAGSTVNVTIHRPIIGTPSAGTLTAVGSACTFNVVAEVCPTYTLKPMTNGAFVDWDNDFVFREFVQ
Ga0310130_0000912_961_1398	F099179	AGG	MRYATKYDMPHLVEMMKAYANEAGIETLKNNQNENHVRSLFYEMLKGRGFILVDDQLRGFIAAYITRNFWNSSVRELHEVAWWVEPEYRSSSIGGKLWLRFNKLAQDLLDQKRVQIVCTSLMPTSPEIDYTRYKFKPLQATFFRE