NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000738

Scaffold Ga0310130_0000738


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000738 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21802
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (80.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012967Metagenome / Metatranscriptome275Y
F022591Metagenome / Metatranscriptome213Y
F045570Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000738_16580_16900F045570GGAGMATRRNFFKYLGLAGGVATGGVVAAAAVLPDAEKCEVIEEIQAAGYNGKLTLGNEYGQLAPPDGTISFGPKFVPGTEKRVTASMTVGPDGEMYLLTNGKWRRIVTE
Ga0310130_0000738_7952_8182F012967GAGMKKMTNEYRRSVLAPRAREPFDPSNSRHMLDFARFVKYNTWRDGCSYYLEDPYTDIPSMIRAKIADYTLSKLVEKV
Ga0310130_0000738_9786_10055F022591N/AMKYENTVKVGDVVKSLDFVGINDCYYVGLVVGISDMDGTFRAKTIKRVWQGKLDKKFPSDFFTAPLLGNHFFDDMAEEKGAAPRIQVVA

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