Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000465 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000465 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32533
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (76.79%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32533

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (76.79%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006545	Metagenome / Metatranscriptome	370	Y
F012773	Metagenome / Metatranscriptome	277	Y
F054845	Metagenome	139	Y
F090330	Metagenome	108	Y
F090344	Metagenome	108	N
F093836	Metagenome	106	N
F101123	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000465_22034_22375	F006545	N/A	MKIKDAAKLFEKYDKRTTEKMAEHNRSGGNVRAPVRSTKNASTADKFDRGNFAYRKASQALTQNHPLKNDKGEPTPAALQFKRWGFPVPQTQDDLRKLKALGARIKERNRKDS
Ga0310130_0000465_23645_23980	F012773	AGG	VKDKGVTVMIGLLGPGKEMGKESESLLEDDMSECPLATQDETINKGNKQKAVLTANYGPSEGEQKCGNCEYGMKLKGCGLKKGEVFCDIFEFKCAESNVCDAHEPKEEEEE
Ga0310130_0000465_24074_24418	F093836	N/A	MVQDELKNWAWWCAGYVGPPVQDKAASAEGNYVSEEVWEGQEARYEPDQLAGERVEEIVRNLPSFSRVVLKATYIQYPYHLEHSIAQRLRISTDRYKSELKKAHEMVARKLKND
Ga0310130_0000465_26928_27236	F090344	N/A	MSAAEIMDLTGHNKWTLFPILHRLIRENKITKKNLRYAPTGYSDKRIRNGRDEFFCADPFGLSGLQNAGDLQCKLRAMQAKTSATGTMQGLTAADGRKVRWN
Ga0310130_0000465_27434_27742	F101123	AGGAGG	MNLQIIDALWNKMLVTYGSEWTRKFDGMPLDEVKGAWADDLRGFTVEQIKYGLSMLGERPPNLIQFKDLCKKAPNYFDQPQLTYRPTPSEEKLAKFRRAYAD
Ga0310130_0000465_30527_30688	F054845	AGGAGG	MEDYDDAAGQAHQEDLLRQQEAEEDAGLFSPVYVLQGERLAAEIFYFKSMEVI
Ga0310130_0000465_31343_31576	F090330	AGGAG	MQNHGAAVVRITALCADLRDLTAPSILETKELEEVITRCIEIQKEAFHLQEWAMTSLDLEYAKAVEARKQKLARLTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000465

Overview

Ecosystem & Geography

Associated Families

Sequences