Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000427 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000427 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34414
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (78.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

34414

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (78.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F026542	Metagenome / Metatranscriptome	197	Y
F099177	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000427_10630_10995	F004789	GGAG	MAANGTYRNPSTKDCWTFCNACNRCSSKGKYAKCTDCSGRYDPVGKVDAHPDDFCDCRNGVLRWRTQQGRLIITRFKSNPFKGEVRYQKKSEDERDWDSYVNDMREKMGDPNWNPISIYE
Ga0310130_0000427_13066_13947	F099177	N/A	LGRKEVTQPKKKSYKEKYYTLKEEEMQELISKAKSGSSSAQEKLLEVFDNFLSKYVALLYYGRYSLSDYDIRRFVSLFVKDQYARFALNKNKITPSASKEINECMRGINYMAKRYGDEEDIRQTVSMTFFQCINRYERKGSIPFSGFLYSYFFYLLKKNVDTFLIDQLGRKTFPLLADESSAEDDSDEKQVGFKANPIEYSIEKMLSAEEIDEFWVLGEKTLPPFDRLSVQERQLVKWRYIDDMRSSQISLKINEHPNTIREHLSKIRIKLRDIIIEEDIEEFSILIKMESYK
Ga0310130_0000427_13944_14459	F026542	GGA	MNINSLEKLQELLSDFLGPQLSEVIDAYSHKENFSKYFVEIPESDIVDLGVENIASIVARTSNVYGRAARFAGIARAQYKILDGKYRKVYKTNRVGKNDAEREASALAAAENEYSALITCEAVVNLAESIEASARIASESARKLLDKVQSIQIASYREEKGSYMESDFSTY
Ga0310130_0000427_15903_16223	F007028	AGGA	MPKITPSAMEQSMGSPIEKVVNTLSESLVASQSPVFICGVNRKINIGNFENIDIYAGITLPLAGVSMEDKESLQKAIEEAASYGFNLVSKETGERYLLIKESQQGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000427

Overview

Ecosystem & Geography

Associated Families

Sequences